SpikeIn            package:SpikeInSubset            R Documentation

_S_u_b_s_e_t _o_f _A_f_f_y_m_e_t_r_i_x _S_p_i_k_e_I_n _E_x_p_e_r_i_m_e_n_t _D_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     Probe-level and pre-proecssed data  for six arrays (two
     triplicates) from the HGU95 and HGU133 SpikeIn experiments.

_U_s_a_g_e:

     data(spikein95)
     data(rma95)
     data(mas95)

     data(spikein133)
     data(rma133)
     data(mas133)

_F_o_r_m_a_t:

     'SpikeIn' is 'ProbeSet' containing the $PM$ and $MM$ intensities
     for a gene spiked in at different concentrations. Use 'pData' to
     see the cosntrations.

_S_o_u_r_c_e:

     'spikein95' and 'spikein133' are instances of 'ProbeSet' with the
     probe-level data for six arrays (two triplicates) from the HGU95
     and HGU133 SpikeIn experiments respectively. 'rma95' and 'rma133'
     contain the data pre-processed with RMA. 'mas95' and 'mas133'
     contain the data preprocssed with mas5 (expression and
     present/absent calls). The calls are in objects called 'pacalls95'
     and 'pacalls133'. 

     For more information see Irizarry, R.A., et al. NAR (2003) <URL:
     http://www.biostat.jhsph.edu/~ririzarr/papers/index.html>

