buildUpstreamSeqs2         package:harbChIP         R Documentation

_w_o_r_k_f_l_o_w _c_o_m_p_o_n_e_n_t - _b_u_i_l_d _a_n _u_p_s_t_r_e_a_m_S_e_q_s _i_n_s_t_a_n_c_e _f_r_o_m _a _F_A_S_T_A _r_e_a_d

_D_e_s_c_r_i_p_t_i_o_n:

     workflow component - build an upstreamSeqs instance from a FASTA
     read

_U_s_a_g_e:

     buildUpstreamSeqs2(fastaRead, organism="sce", provenance="harmen")

_A_r_g_u_m_e_n_t_s:

fastaRead: results of a readFASTA from Biostrings

organism: string naming organism

provenance: string or structure describing provenance

_D_e_t_a_i_l_s:

     generates an instance of upstreamSeqs

_V_a_l_u_e:

     generates an instance of upstreamSeqs

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     # x = readFASTA(...)
     # y = buildUpstreamSeqs2(x)

