upstreamSeqs-class         package:harbChIP         R Documentation

_C_l_a_s_s "_u_p_s_t_r_e_a_m_S_e_q_s"

_D_e_s_c_r_i_p_t_i_o_n:

     container for a collection of upstream sequences

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("upstreamSeqs",
     ...)'. Environments are used to store collections of DNAstrings.

_S_l_o_t_s:

     '_s_e_q_s': Object of class '"environment"' ~~ 

     '_c_h_r_o_m': Object of class '"environment"' ~~ 

     '_r_e_v_C_o_m_p': Object of class '"environment"' ~~ 

     '_t_y_p_e': Object of class '"environment"' ~~ 

     '_o_r_g_a_n_i_s_m': Object of class '"character"' ~~ 

     '_p_r_o_v_e_n_a_n_c_e': Object of class '"ANY"' ~~ 

_M_e_t_h_o_d_s:

     _N_m_e_r_s 'signature(n = "numeric", orf = "character", usobj =
          "upstreamSeqs")': obtain all subsequences of length n as view
          elements of a DNA string 

     _k_e_y_s 'signature(x = "upstreamSeqs")': ... 

     _o_r_g_a_n_i_s_m 'signature(x = "upstreamSeqs")': ... 

     _s_e_q_s 'signature(x = "upstreamSeqs")': ... 

     _s_h_o_w 'signature(object = "upstreamSeqs")': ... 

_A_u_t_h_o_r(_s):

     ~~who you are~~

_E_x_a_m_p_l_e_s:

     showClass("upstreamSeqs")
     data(sceUpstr)
     sceUpstr
     keys(sceUpstr)[1:5]

