allhex               package:harbChIP               R Documentation

_u_t_i_l_i_t_y _f_u_n_c_t_i_o_n: _g_e_t _a_l_l _h_e_x_a_m_e_r_s _i_n _u_p_s_t_r_e_a_m _s_e_q_u_e_n_c_e _f_o_r _a_n _O_R_F

_D_e_s_c_r_i_p_t_i_o_n:

     utility function: get all hexamers in upstream sequence for an ORF

_U_s_a_g_e:

     allhex(orf, usobj)

_A_r_g_u_m_e_n_t_s:

     orf: character string, ORF name

   usobj: upstreamSeqs object

_D_e_t_a_i_l_s:

     computes Biostrings views

_V_a_l_u_e:

     computes Biostrings views

_A_u_t_h_o_r(_s):

     Vince Carey <stvjc@channing.harvard.edu>

_E_x_a_m_p_l_e_s:

     data(sceUpstr)
     allhex("YAL001C", sceUpstr)

