# Experimental Data Package: harbChIP

## Documentation for package ‘harbChIP’

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

allhex | utility function: get all hexamers in upstream sequence for an ORF
buildUpstreamSeqs2 | workflow component - build an upstreamSeqs instance from a FASTA read
chkAllUS | analyze relationship between motif frequency and binding intensity for selected motif and TF
chkMotif4TF | analyze relationship between motif frequency and binding intensity for selected motif and TF
getUpstream | Class "upstreamSeqs"
harbChIP | Experimental Data Package: harbChIP
keys | Class "upstreamSeqs"
keys,upstreamSeqs-method | Class "upstreamSeqs"
Nmers | Class "upstreamSeqs"
Nmers,numeric,character,upstreamSeqs-method | Class "upstreamSeqs"
organism | Class "upstreamSeqs"
organism,upstreamSeqs-method | Class "upstreamSeqs"
sceUpstr | Biostrings representations of S. cerevisiae upstream regions
seqs | Class "upstreamSeqs"
seqs,upstreamSeqs-method | Class "upstreamSeqs"
show,upstreamSeqs-method | Class "upstreamSeqs"
upstreamSeqs-class | Class "upstreamSeqs"