\HeaderA{allhex}{utility function: get all hexamers in upstream sequence for an ORF}{allhex}
\keyword{models}{allhex}
\begin{Description}\relax
utility function: get all hexamers in upstream sequence for an ORF
\end{Description}
\begin{Usage}
\begin{verbatim}
allhex(orf, usobj)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{orf}] character string, ORF name
\item[\code{usobj}] upstreamSeqs object
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
computes Biostrings views
\end{Details}
\begin{Value}
computes Biostrings views
\end{Value}
\begin{Author}\relax
Vince Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
data(sceUpstr)
allhex("YAL001C", sceUpstr)
\end{ExampleCode}
\end{Examples}

