eset                 package:kidpack                 R Documentation

_r_e_n_a_l _c_e_l_l _c_a_n_c_e_r _e_x_p_r_e_s_s_i_o_n _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     renal cell cancer expression data

_U_s_a_g_e:

     data("eset")
     data("esetSpot")
     data("cloneanno")

_F_o_r_m_a_t:

     'eset' is an object of type 'exprSet'.  Samples (columns of the
     expression matrix) correspond to renal cell  cancer samples from
     74 patients with kidney tumors. Probes (rows of the expression
     matrix) correspond to different cDNA clones.

     'cloneanno' is a data frame with 4224 rows, one for each clone.
     Its columns are: 'plate', 'SrcRow', 'SrcCol', 'imageid',
     'AccNumber', 'spot1', 'spot2', 'description', 'vendor'

     The arrays that were used to measure these data contained two
     features for each reporter (clone), and 'esetSpot' is the data
     _before_ averaging over the two features per reporter. Spots
     4225:8448 are the duplicates of spots 1:4224.

_S_o_u_r_c_e:

     Holger Sueltmann, DKFZ. Also available from  ArrayExpress,
     Accession number E-DKFZ-1.

     The data import fro Genepix files and Excel tables, and the
     preprocessing is described in the files preproc.Rnw and
     preproc.pdf in the 'scripts' subdirectory of the package. Please
     refer to these for details!

_R_e_f_e_r_e_n_c_e_s:

     Gene expression in kidney cancer is associated with novel tumor
     subtypes,  cytogenetic abnormalities and metastasis formation.
     Holger Sueltmann, Anja von Heydebreck, Wolfgang Huber, Ruprecht
     Kuner,  Andreas Buness, Markus Vogt, Bastian Gunawan, Martin
     Vingron,  Laszlo Fuezesi, and Annemarie Poustka. Submitted.

_S_e_e _A_l_s_o:

     'qua'

_E_x_a_m_p_l_e_s:

     data(eset)
     eset
     data(cloneanno)
     cloneanno[1,]

     ## see also the vignette

