Package: DiffBind
Type: Package
Version: 1.2.4
Title: Differential Binding Analysis of ChIP-Seq peak data
Date: 2012-09-07
Author: Rory Stark<rory.stark@cancer.org.uk>, Gordon Brown <gordon.brown@cancer.org.uk>
Maintainer: Rory Stark<rory.stark@cancer.org.uk>
Description: Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
biocViews: Bioinformatics, HighThroughputSequencing, ChIPseq
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.14.0), GenomicRanges
Imports: RColorBrewer, amap, edgeR (>= 2.3.58), gplots, limma, DESeq,
        grDevices, stats, utils, IRanges, zlibbioc
Suggests: DESeq
Enhances: rgl, parallel
LinkingTo: Rsamtools
Collate: core.R parallel.R counts.R contrast.R analyze.R io.R helper.R
        utils.R DBA.R
Packaged: 2012-09-08 06:04:41 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-09-08 10:05:11 UTC; windows
Archs: i386, x64
