as.list,TranscriptDb-method	TranscriptDb-class
asBED,TranscriptDb-method	TranscriptDb-class
asBED,TranscriptDb-method	as-format-methods
asGFF,TranscriptDb-method	TranscriptDb-class
asGFF,TranscriptDb-method	as-format-methods
cds	transcripts
cds,TranscriptDb-method	transcripts
cdsBy	transcriptsBy
cdsBy,TranscriptDb-method	transcriptsBy
cdsByOverlaps	transcriptsByOverlaps
cdsByOverlaps,TranscriptDb-method	transcriptsByOverlaps
class:FeatureDb	TranscriptDb-class
class:TranscriptDb	TranscriptDb-class
cols,TranscriptDb-method	TranscriptDb-class
DEFAULT_CIRC_SEQS	DEFAULT_CIRC_SEQS
exons	transcripts
exons,data.frame-method	transcripts
exons,TranscriptDb-method	transcripts
exonsBy	transcriptsBy
exonsBy,TranscriptDb-method	transcriptsBy
exonsByOverlaps	transcriptsByOverlaps
exonsByOverlaps,TranscriptDb-method	transcriptsByOverlaps
exons_deprecated	regions
extractTranscripts	extractTranscriptsFromGenome
extractTranscriptsFromGenome	extractTranscriptsFromGenome
FeatureDb	TranscriptDb-class
FeatureDb-class	TranscriptDb-class
features	features
features,FeatureDb-method	features
fiveUTRsByTranscript	transcriptsBy
fiveUTRsByTranscript,TranscriptDb-method	transcriptsBy
getChromInfoFromBiomart	makeTranscriptDbFromBiomart
getChromInfoFromUCSC	makeTranscriptDbFromUCSC
id2name	id2name
intronsByTranscript	transcriptsBy
intronsByTranscript,TranscriptDb-method	transcriptsBy
introns_deprecated	regions
isActiveSeq	TranscriptDb-class
isActiveSeq,TranscriptDb-method	TranscriptDb-class
isActiveSeq<-	TranscriptDb-class
isActiveSeq<-,TranscriptDb-method	TranscriptDb-class
keys,TranscriptDb-method	TranscriptDb-class
keytypes,TranscriptDb-method	TranscriptDb-class
loadFeatures	saveFeatures
makeFDbPackageFromUCSC	makeTxDbPackage
makeFeatureDbFromUCSC	makeFeatureDbFromUCSC
makeTranscriptDb	makeTranscriptDb
makeTranscriptDbFromBiomart	makeTranscriptDbFromBiomart
makeTranscriptDbFromUCSC	makeTranscriptDbFromUCSC
makeTxDbPackage	makeTxDbPackage
makeTxDbPackageFromBiomart	makeTxDbPackage
makeTxDbPackageFromUCSC	makeTxDbPackage
metadata,FeatureDb-method	TranscriptDb-class
metadata,TranscriptDb-method	TranscriptDb-class
microRNAs	transcripts
microRNAs,TranscriptDb-method	transcripts
saveFeatures	saveFeatures
saveFeatures,FeatureDb-method	saveFeatures
saveFeatures,TranscriptDb-method	saveFeatures
select,TranscriptDb-method	TranscriptDb-class
seqinfo,TranscriptDb-method	TranscriptDb-class
show,FeatureDb-method	TranscriptDb-class
show,TranscriptDb-method	TranscriptDb-class
sortExonsByRank	extractTranscriptsFromGenome
spliceGraph	spliceGraph
spliceGraph,TranscriptDb-method	spliceGraph
supportedMiRBaseBuildValues	makeTxDbPackage
supportedUCSCFeatureDbTables	makeFeatureDbFromUCSC
supportedUCSCFeatureDbTracks	makeFeatureDbFromUCSC
supportedUCSCtables	makeTranscriptDbFromUCSC
threeUTRsByTranscript	transcriptsBy
threeUTRsByTranscript,TranscriptDb-method	transcriptsBy
TranscriptDb	TranscriptDb-class
TranscriptDb-class	TranscriptDb-class
transcriptLocs2refLocs	extractTranscriptsFromGenome
transcripts	transcripts
transcripts,data.frame-method	transcripts
transcripts,TranscriptDb-method	transcripts
transcriptsBy	transcriptsBy
transcriptsBy,TranscriptDb-method	transcriptsBy
transcriptsByOverlaps	transcriptsByOverlaps
transcriptsByOverlaps,TranscriptDb-method	transcriptsByOverlaps
transcripts_deprecated	regions
transcriptWidths	extractTranscriptsFromGenome
tRNAs	transcripts
tRNAs,TranscriptDb-method	transcripts
UCSCFeatureDbTableSchema	makeFeatureDbFromUCSC
