%in%,ANY,segReads-method	segReads
as.list,AlignedRead-method	PICS
chromosome	pics-class
chromosome,pics-method	pics-class
chromosome,picsError-method	picsError-class
chromosome,picsList-method	picsList-class
code	PICS
code,pics-method	PICS
code,picsError-method	PICS
code,picsList-method	PICS
coerce	PICS
coerce,AlignedRead,GenomeData-method	PICS
coerce,data.frame,GenomeData-method	PICS
coerce,data.frame,picsList-method	PICS
coerce,picsList,data.frame-method	PICS
coerce,picsList,RangedData-method	PICS
coerce,RangedData,GenomeData-method	PICS
delta	pics-class
delta,pics-method	pics-class
delta,picsError-method	picsError-class
delta,picsList-method	picsList-class
density	PICS
density,pics-method	PICS
density,picsError-method	PICS
density,picsList-method	picsList-class
FDR	plot-FDR
K	PICS
K,pics-method	PICS
K,picsError-method	PICS
K,picsList-method	PICS
length	picsList-class
length,picsList-method	picsList-class
length,segReadsList-method	SegReadsList
makeRangedDataOutput	makeRangedDataOutput
map	segReads
map,segReads-method	segReads
map,segReadsList-method	segReads
maxRange	PICS
maxRange,pics-method	PICS
maxRange,picsError-method	PICS
maxRange,picsList-method	PICS
minRange	PICS
minRange,pics-method	PICS
minRange,picsError-method	PICS
minRange,picsList-method	PICS
mu	pics-class
mu,pics-method	pics-class
mu,picsError-method	picsError-class
mu,picsList-method	picsList-class
newPics	pics-class
newPics,pics-method	pics-class
newPicsError	picsError-class
newPicsError,picsError-method	picsError-class
newPicsList	picsList-class
newPicsList,picsList-method	picsList-class
paraEMH	setParaEM
paraEMTF	setParaEM
paraPriorH	setParaPrior
paraPriorTF	setParaPrior
PICS	PICS
pics	PICS
pics-class	PICS
picsError	picsError-class
picsError-class	picsError-class
picsFDR	picsFDR
picsList	picsList-class
picsList-class	picsList-class
plot,pics,segReads-method	PICS
plot,picsError,segReads-method	PICS
plot,picsList,picsList-method	plot-FDR
plot,picsList,segReadsList-method	PICS
score	PICS
score,pics-method	pics-class
score,picsError-method	picsError-class
score,picsList-method	picsList-class
scoreForward	PICS
scoreForward,pics-method	PICS
scoreForward,picsError-method	PICS
scoreForward,picsList-method	PICS
scoreReverse	PICS
scoreReverse,pics-method	PICS
scoreReverse,picsError-method	PICS
scoreReverse,picsList-method	PICS
se	pics-class
se,pics-method	pics-class
se,picsError-method	picsError-class
se,picsList-method	picsList-class
seF	pics-class
seF,pics-method	pics-class
seF,picsError-method	picsError-class
seF,picsList-method	picsList-class
segmentReads	segmentReads
segReads	segReads
segReads-class	segReads
segReadsList	SegReadsList
segReadsList-class	SegReadsList
seR	pics-class
seR,pics-method	pics-class
seR,picsError-method	picsError-class
seR,picsList-method	picsList-class
setParaEM	setParaEM
setParaPrior	setParaPrior
show	show
show,pics-method	show
show,picsError-method	show
show,picsList-method	show
show,segReads-method	show
show,segReadsList-method	show
show-methods	show
sigmaSqF	PICS
sigmaSqF,pics-method	PICS
sigmaSqF,picsError-method	PICS
sigmaSqF,picsList-method	PICS
sigmaSqR	PICS
sigmaSqR,pics-method	PICS
sigmaSqR,picsError-method	PICS
sigmaSqR,picsList-method	PICS
summary	summary
summary,pics-method	summary
summary,picsList-method	summary
summary,segReads-method	summary
summary,segReadsList-method	summary
summary-methods	summary
unique	unique
unique,GenomeData-method	unique
unique-methods	unique
w	pics-class
w,pics-method	pics-class
w,picsError-method	picsError-class
w,picsList-method	picsList-class
[,picsList,ANY,ANY-method	picsList-class
[,picsList-method	picsList-class
[,segReadsList,ANY,ANY-method	SegReadsList
[,segReadsList-method	SegReadsList
[[,picsList,ANY,ANY-method	picsList-class
[[,picsList-method	picsList-class
[[,segReadsList,ANY,ANY-method	SegReadsList
[[,segReadsList-method	SegReadsList
