Package: categoryCompare
Version: 1.0.2
Title: Meta-analysis of high-throughput experiments using feature
        annotations
Author: Robert M. Flight <rflight79@gmail.com>
Maintainer: Robert M. Flight <rflight79@gmail.com>
License: GPL-2
Depends: R (>= 2.10), Biobase (>= 1.15.29), AnnotationDbi (>= 0.1.15),
        Category
Suggests: methods, GSEABase, hwriter, colorspace, graph, GO.db,
        KEGG.db, estrogen, org.Hs.eg.db, hgu95av2.db, limma, affy,
        genefilter
Imports: Biobase (>= 1.15.29), AnnotationDbi (>= 0.1.15), hwriter,
        GSEABase, Category (>= 2.21.2), GOstats, annotate, colorspace,
        graph, RCytoscape (>= 1.5.11)
LazyLoad: yes
Description: Calculates significant annotations (categories) in each of two (or more) feature (i.e. gene) lists, determines the overlap between the annotations, and returns graphical and tabular data about the significant annotations and which combinations of feature lists the annotations were found to be significant. Interactive exploration is facilitated through the use of RCytoscape (heavily suggested).
biocViews: Bioinformatics, Annotation, GO, MultipleComparisons,
        Pathways, GeneExpression
SystemRequirements: Cytoscape (>= 2.8.0) (if used for visualization of
        results, heavily suggested), CytoscapeRPC plugin (>= 1.8)
TODO: Text and HTML output without graphs.
Packaged: 2012-08-02 05:48:58 UTC; biocbuild
