Package: exomeCopy
Type: Package
Title: CNV detection from exome sequencing read depth
Version: 1.2.0
Date: 2012-03-12
Author: Michael Love
Maintainer: Michael Love <love@molgen.mpg.de>
Description: Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples.  The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.
License: GPL (>= 2)
LazyLoad: yes
Imports: stats4, methods
Depends: IRanges, GenomicRanges, Rsamtools
Suggests: Biostrings
biocViews: CopyNumberVariants, Sequencing, HighThroughputSequencing,
        Genetics
Packaged: 2012-03-31 07:00:28 UTC; biocbuild
