# Illumina Ratv1 annotation data (chip illuminaRatv1)

## Documentation for package ‘illuminaRatv1.db’ version 1.14.0

- DESCRIPTION file.

## Help Pages

illuminaRatv1 | Bioconductor annotation data package
illuminaRatv1.db | Bioconductor annotation data package
illuminaRatv1ACCNUM | Map Manufacturer identifiers to Accession Numbers
illuminaRatv1ALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
illuminaRatv1ARRAYADDRESS | Custom mappings added to the package
illuminaRatv1CHR | Map Manufacturer IDs to Chromosomes
illuminaRatv1CHRLENGTHS | A named vector for the length of each of the chromosomes
illuminaRatv1CHRLOC | Map Manufacturer IDs to Chromosomal Location
illuminaRatv1CHRLOCEND | Map Manufacturer IDs to Chromosomal Location
illuminaRatv1CODINGZONE | Custom mappings added to the package
illuminaRatv1ENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers
illuminaRatv1ENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers
illuminaRatv1ENSEMBLREANNOTATED | Custom mappings added to the package
illuminaRatv1ENTREZID | Map between Manufacturer Identifiers and Entrez Gene
illuminaRatv1ENTREZREANNOTATED | Custom mappings added to the package
illuminaRatv1ENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
illuminaRatv1ENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
illuminaRatv1fullReannotation | Custom mappings added to the package
illuminaRatv1GENENAME | Map between Manufacturer IDs and Genes
illuminaRatv1GENOMICLOCATION | Custom mappings added to the package
illuminaRatv1GENOMICMATCHSIMILARITY | Custom mappings added to the package
illuminaRatv1GO | Map between Manufacturer IDs and Gene Ontology (GO)
illuminaRatv1GO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
illuminaRatv1GO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
illuminaRatv1listNewMappings | Custom mappings added to the package
illuminaRatv1LOCUSID | Map between Manufacturer Identifiers and Entrez Gene
illuminaRatv1MAP | Map between Manufacturer Identifiers and cytogenetic maps/bands
illuminaRatv1MAPCOUNTS | Number of mapped keys for the maps in package illuminaRatv1.db
illuminaRatv1NUID | Custom mappings added to the package
illuminaRatv1ORGANISM | The Organism information for illuminaRatv1
illuminaRatv1ORGPKG | The Organism information for illuminaRatv1
illuminaRatv1OTHERGENOMICMATCHES | Custom mappings added to the package
illuminaRatv1OVERLAPPINGSNP | Custom mappings added to the package
illuminaRatv1PATH | Mappings between probe identifiers and KEGG pathway identifiers
illuminaRatv1PATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
illuminaRatv1PFAM | Map Manufacturer IDs to Pfam IDs
illuminaRatv1PMID | Map between Manufacturer Identifiers and PubMed Identifiers
illuminaRatv1PMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
illuminaRatv1PROBEQUALITY | Custom mappings added to the package
illuminaRatv1PROBESEQUENCE | Custom mappings added to the package
illuminaRatv1PROSITE | Map Manufacturer IDs to PROSITE ID
illuminaRatv1REFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
illuminaRatv1REPEATMASK | Custom mappings added to the package
illuminaRatv1REPORTERGROUPID | Custom mappings added to the package
illuminaRatv1REPORTERGROUPNAME | Custom mappings added to the package
illuminaRatv1SECONDMATCHES | Custom mappings added to the package
illuminaRatv1SECONDMATCHSIMILARITY | Custom mappings added to the package
illuminaRatv1SYMBOL | Map between Manufacturer Identifiers and Gene Symbols
illuminaRatv1SYMBOLREANNOTATED | Custom mappings added to the package
illuminaRatv1TRANSCRIPTOMICMATCHSIMILARITY | Custom mappings added to the package
illuminaRatv1UNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
illuminaRatv1UNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
illuminaRatv1UNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
illuminaRatv1_dbconn | Collect information about the package annotation DB
illuminaRatv1_dbfile | Collect information about the package annotation DB
illuminaRatv1_dbInfo | Collect information about the package annotation DB
illuminaRatv1_dbschema | Collect information about the package annotation DB