Cagney2001BPGraph       A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Cagney et al.
                        2001.
Gavin2002BPGraph        A directed Graph for the AP-MS Bait to Prey
                        Interaction data detected by Gavin et al. 2002.
Gavin2006BPGraph        A directed Graph for the AP-MS Bait to Prey
                        Interaction data detected by Gavin et al. 2006.
Hazbun2003BPGraph       A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Hazbun et al.
                        2003.
Ho2002BPGraph           A directed Graph for the AP-MS Bait to Prey
                        Interaction data detected by Ho et al. 2002.
Ito2001BPGraph          A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Ito et al. 2001.
ItoCore2001BPGraph      A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Ito et al. 2001.
ItoFull2001BPGraph      A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Ito et al. 2001.
Krogan2004BPGraph       A directed Graph for the AP-MS Bait to Prey
                        Interaction data detected by Krogan et al.
                        2004.
Krogan2006BPGraph       A directed Graph for the AP-MS Bait to Prey
                        Interaction data detected by Krogan et al.
                        2006.
Tong2002BPGraph         A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Tong et al. 2002.
Uetz2000BPGraph1        A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Uetz et al. 2000.
Uetz2000BPGraph2        A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Uetz et al. 2000.
Zhao2005BPGraph         A directed Graph for the Y2H Bait to Prey
                        Interaction data detected by Zhao et al. 2005.
bpExperimentNames       A Character Vector Containing the Names of the
                        13 Graph Objects Stored in this Data Package
collectIntactPPIData    A function that parses the Intact repository
                        for bait to prey affiliation
createBPList            A function to create the Bait to Prey
                        association list.
intAct2Sys              A function that maps the Intact ID's to the
                        first org.Sc.sgd systematic name using the
                        org.Sc.sgd package
intActPPIData           A data set documenting the output of
                        collectIntactPPIData
map2Systematic          A function that maps the Intact ID's to Yeast
                        Systematic Names if possible
map2Systematic2         A secondary function that maps the Intact ID's
                        to Yeast Systematic Names if possible
ppipred                 Protein-protein predictions
sWAC2Sys                A data set that contains the translation
                        between Swiss accension codes to Gene
                        Systematic Names
stochasticBaits         Lists of viable baits in each bait to prey
                        dataset which are conjectured not to be
                        systematically biased.
tableList               A list of tables for the downloaded and parsed
                        xml files from the IntAct database
twTableAPMS             A table to look at the permutation statistics
                        of pairs of Y2H experiment.
twTableY2H              A table to look at the permutation statistics
                        of pairs of Y2H experiment.
viablePrey              Lists of viable prey or baits in each bait to
                        prey dataset
y2h                     A data set documenting the bait to prey
                        associations for the y2h empirical data-sets as
                        found within the IntAct repository.
y2hSysGW                A data object documenting the bait to prey
                        associations for the y2h empirical data-sets
                        with two restrictions.
