ArrayExpressHTS	ArrayExpressHTS
ArrayExpressHTSFastQ	ArrayExpressHTSFastQ
getDefaultFilteringOptions	processing-options
getDefaultProcessingOptions	processing-options
getDefaultRCloudOptions	processing-options
getPipelineOption	package-options
getPipelineOptions	package-options
isRCloud	isRCloud
prepareAnnotation	prepareAnnotation
prepareReference	prepareReference
setPipelineOptions	package-options
