Package: BitSeq
Type: Package
Depends: Rsamtools, zlibbioc
Imports: IRanges
LinkingTo: Rsamtools, zlibbioc
Suggests: edgeR, DESeq
Title: Transcript expression inference and differential expression
        analysis for RNA-seq data
Version: 1.4.3
Date: 2013-07-08
Author: Peter Glaus, Antti Honkela and Magnus Rattray
Maintainer: Peter Glaus <glaus@cs.man.ac.uk>
Description: The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.
License: Artistic-2.0 + file LICENSE
biocViews: GeneExpression, DifferentialExpression,
        HighThroughputSequencing, RNAseq
Packaged: 2013-07-10 07:13:29 UTC; biocbuild
Built: R 3.0.1; i386-w64-mingw32; 2013-07-10 11:39:24 UTC; windows
Archs: i386, x64
