Package: DiffBind
Type: Package
Version: 1.6.2
Title: Differential Binding Analysis of ChIP-Seq peak data
Date: 2013-04-25
Author: Rory Stark <rory.stark@cruk.cam.ac.uk>, Gordon Brown <gordon.brown@cruk.cam.ac.uk>
Maintainer: Rory Stark <rory.stark@cruk.cam.ac.uk>
Description: Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.
biocViews: Bioinformatics, HighThroughputSequencing, ChIPseq
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.14.0), GenomicRanges
Imports: RColorBrewer, amap, edgeR (>= 2.3.58), gplots, DESeq,
        grDevices, stats, utils, IRanges, zlibbioc
Suggests: DESeq, Rsamtools
Enhances: rgl, parallel
LinkingTo: Rsamtools
Collate: core.R parallel.R counts.R contrast.R analyze.R io.R helper.R
        utils.R overLapper.R DBA.R
Packaged: 2013-04-26 07:03:18 UTC; biocbuild
Built: R 3.0.0; i386-w64-mingw32; 2013-04-26 11:43:57 UTC; windows
Archs: i386, x64
