Package: FunciSNP
Type: Package
Title: Integrating Functional Non-coding Datasets with Genetic
        Association Studies to Identify Candidate Regulatory SNPs
Version: 1.2.0
Date: 2013-01-19
Author: Simon G. Coetzee <simon@simoncoetzee.com> and Houtan Noushmehr, PhD <houtan@usp.br>
Maintainer: Simon G. Coetzee <simon@simoncoetzee.com>
biocViews: Infrastructure, DataRepresentation, DataImport,
        SequenceMatching, Annotation
Depends: R (>= 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,
        FunciSNP.data
Imports: AnnotationDbi, IRanges, Rsamtools (>= 1.6.1), rtracklayer(>=
        1.14.1), methods, ChIPpeakAnno (>= 2.2.0), GenomicRanges,
        VariantAnnotation, plyr, org.Hs.eg.db, snpStats, ggplot2 (>=
        0.9.0), reshape (>= 0.8.4), scales
Enhances: parallel
Description: FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions. 
License: GPL-3
URL: http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
LazyData: yes
Packaged: 2013-04-04 11:11:24 UTC; biocbuild
Built: R 3.0.0; ; 2013-04-04 16:52:35 UTC; windows
