Package: SPIA
Version: 2.12.0
Date: 2013-2-20
Title: Signaling Pathway Impact Analysis (SPIA) using combined evidence
        of pathway over-representation and unusual signaling
        perturbations
Author: Adi Laurentiu Tarca <atarca@med.wayne.edu>, Purvesh Kathri <purvesh@cs.wayne.edu> and Sorin Draghici <sorin@wayne.edu>
Depends: R (>= 2.14.0), graphics, KEGGgraph
Suggests: graph, Rgraphviz, hgu133plus2.db
Maintainer: Adi Laurentiu Tarca <atarca@med.wayne.edu>
Description: This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study. 
License: GPL (>= 2)
URL: http://bioinformatics.oxfordjournals.org/cgi/reprint/btn577v1
biocViews: Microarray, GraphsAndNetworks
Collate: spia.R plotP.R combfunc.R getP2.R makeSPIAdata.R
Imports: graphics
LazyLoad: yes
Packaged: 2013-04-04 10:28:04 UTC; biocbuild
Built: R 3.0.0; ; 2013-04-04 17:17:22 UTC; windows
