Package: SplicingGraphs
Title: Create, manipulate, visualize splicing graphs, and assign
        RNA-seq reads to them
Version: 1.0.4
Author: D. Bindreither, M. Carlson, M. Morgan, H. Pages
License: Artistic-2.0
Description: This package allows the user to create, manipulate, and visualize
	splicing graphs and their bubbles based on a gene model for a given
	organism. Additionally it allows the user to assign RNA-seq reads to
	the edges of a set of splicing graphs, and to summarize them in
        different ways.
Maintainer: H. Pages <hpages@fhcrc.org>
Depends: BiocGenerics, IRanges (>= 1.17.43), GenomicRanges (>=
        1.11.45), GenomicFeatures, Rgraphviz (>= 2.3.7)
Imports: methods, utils, igraph, BiocGenerics, IRanges, GenomicRanges,
        GenomicFeatures, graph, Rgraphviz
Suggests: igraph, Gviz, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene,
        RNAseqData.HNRNPC.bam.chr14, RUnit
Collate: utils.R igraph-utils.R SplicingGraphs-class.R
        plotTranscripts-methods.R sgedgesByGene-methods.R
        txpath-methods.R sgedges-methods.R sgraph-methods.R
        rsgedgesByGene-methods.R bubbles-methods.R assignReads.R
        countReads-methods.R toy_data.R zzz.R
biocViews: Genetics, Annotation, DataRepresentation, Visualization,
        Sequencing, RNAseq, GeneExpression
Packaged: 2013-06-07 07:26:56 UTC; biocbuild
Built: R 3.0.1; ; 2013-06-07 12:09:28 UTC; windows
