Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes, 
	predict coding outcomes
Version: 1.6.8
Author: Valerie Obenchain, Martin Morgan, Michael Lawrence with
	contributions from Stephanie Gogarten. 
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
License: Artistic-2.0
biocViews: DataImport, Sequencing, HighThroughputSequencing, SNP,
        Annotation, Genetics, Homo_sapiens
Depends: R (>= 2.8.0), methods, BiocGenerics, GenomicRanges (>=
        1.11.29), Rsamtools (>= 1.11.26), IRanges (>= 1.17.4)
Imports: methods, BiocGenerics, IRanges, Biostrings, Biobase,
        Rsamtools, AnnotationDbi (>= 1.17.11), zlibbioc, BSgenome,
        GenomicFeatures (>= 1.9.35), DBI, utils
Suggests: RUnit, BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        SNPlocs.Hsapiens.dbSNP.20110815,
        SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
        PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2
LinkingTo: IRanges, Biostrings, Rsamtools
LazyLoad: yes
Packaged: 2013-10-02 07:18:38 UTC; biocbuild
Built: R 3.0.1; i386-w64-mingw32; 2013-10-02 12:31:17 UTC; windows
Archs: i386, x64
