export(limma2annaffy, foldFilt, vennSelect, vennCounts2, maplot,
       probes2table, affystart, plotDeg, plotHist, plotPCA,
       hyperG2annaffy, vennSelectBM,
       limma2biomaRt, linksBM, annBM, foldFiltBM,
       probes2tableBM, vennSelectFC, hyperGoutput,
       getUniqueLL,writeFit,makeHmap,mirna2mrna,getMainProbes,
       runRomer,outputRomer,makeVenn,vennSelect2, vennPage)

importMethodsFrom(affy, hist, mas5calls)

importMethodsFrom(annaffy, "colnames<-", saveHTML, saveText)

importMethodsFrom(AnnotationDbi, Term, get)

importMethodsFrom(Biobase, annotation, exprs, featureNames,
                  sampleNames, write.exprs)

importMethodsFrom(genefilter, plot)

importFrom(affy, AffyRNAdeg, mas5, plotAffyRNAdeg, plotDensity,
           ReadAffy, rma)

importFrom(annaffy, aaf.handler, aafTable, aafTableAnn, aafTableInt)

importFrom(Biobase, addVigs2WinMenu, assayDataElement)

importFrom(graphics, layout, legend, par, text)

importFrom(grDevices, dev.off, rainbow, recordPlot, replayPlot)

#importFrom(methods, is)

importFrom(stats, median, p.adjust, prcomp)

importFrom(utils, write.table)

importFrom(GO.db, GOTERM)

importFrom(biomaRt, getBM, listAttributes, listFilters,
           useMart)

importFrom(limma, topTable, vennCounts,
           decideTests, romer, symbols2indices, vennDiagram)

importFrom(GOstats, probeSetSummary)

importFrom(annotate, htmlpage, getEG)

importFrom(genefilter, genefilter, filterfun, kOverA, pOverA, cv)

#export(genefilter, filterfun, kOverA, pOverA, cv)

importFrom(gcrma, gcrma)

importFrom(splines, ns)

importFrom(xtable, xtable)

#import(annaffy)

importFrom(lattice, xyplot, panel.xyplot, panel.abline, lattice.options)

importFrom(gplots, heatmap.2, bluered)

importFrom(R2HTML, HTML, as.title, HTMLInsertGraph, HTMLInitFile)

importFrom(oligoClasses, db)

importFrom(ReportingTools, HTMLReport, CSVFile, publish, finish, reporting.theme, filename)

importFrom(hwriter, hwrite, hwriteImage, hmakeTag)
