Package: annmap
Type: Package
Title: Genome annotation and visualisation package pertaining to
        Affymetrix arrays and NGS analysis.
Description: annmap provides annotation mappings for Affymetrix exon arrays and
             coordinate based queries to support deep sequencing data analysis.
             Database access is hidden behind the API which provides a set of
             functions such as genesInRange(), geneToExon(), exonDetails(),
             etc. Functions to plot gene architecture and BAM file data are
             also provided. Underlying data are from Ensembl.
Version: 1.2.1
Date: 2011-09-14
Author: Tim Yates <tyates@picr.man.ac.uk>
Maintainer: Tim Yates <tyates@picr.man.ac.uk>
Depends: R (>= 2.15.0), methods, GenomicRanges
Imports: DBI, RMySQL (>= 0.6-0), digest, Biobase, grid, lattice,
        Rsamtools, genefilter, IRanges, BiocGenerics
Suggests: RUnit, rjson
License: GPL-2
URL: http://annmap.picr.man.ac.uk
biocViews: Annotation, Bioinformatics, Microarray, OneChannel,
        ReportWriting, Transcription, Visualization
Collate: zzz.R db.R utils.R cache.R statements.R filtering.R utr.R
        coords.R ws.R plot.genomic.R plot.ngs.R si.R
Packaged: 2013-05-21 06:19:38 UTC; biocbuild
