Package: maDB
Version: 1.32.0
Title: Microarray database and utility functions for microarray data
        analysis.
Author: Johannes Rainer <johannes.rainer@i-med.ac.at>
Maintainer: Johannes Rainer <johannes.rainer@i-med.ac.at>
Depends: R (>= 2.6.0), Biobase (>= 2.5.5), affy (>= 1.23.4), pgUtils
        (>= 1.23.2), limma (>= 1.8.0), methods
Suggests: annaffy (>= 1.6.2), biomaRt (>= 1.8.2), geneplotter
Description: maDB allows to create a simple microarray database to store
        microarray experiments and annotation data into it. Affymetrix
	GeneChip expression values as well as values from two color
	microarrays can be stored into the database. 
	Whole experiments or subsets from a experiment (or also values for a
	subset of genes in a subset of microarrays) can be fetched back to
	R. Additionally maDB provides 
	different utility functions for the microarray data analysis like
	functions to draw MA plots or volcano plots with the data points color
	coded according to the local  
	point density or functions that allow a replicate handling of
	miroarrays. 
biocViews: Microarray,TwoChannel,OneChannel,Visualization
License: LGPL (>= 2)
Collate: tkfiUtils.R tkfiUnited.R tkfiUnitedDB.R Annotation.R
        geneRanking.R smalltkfi.R SearchPattern.R
Packaged: 2013-04-04 06:49:57 UTC; biocbuild
