Package: rnaSeqMap
Type: Package
Title: rnaSeq secondary analyses
Version: 2.14.0
Date: 2012-09-08
Author: Anna Lesniewska <alesniewska@cs.put.poznan.pl>; Michal Okoniewski <michal@fgcz.ethz.ch> 
Maintainer: Michal Okoniewski <michal@fgcz.ethz.ch>
Depends: R (>= 2.11.0), methods, xmapcore, Biobase, Rsamtools
Imports: GenomicRanges, IRanges, edgeR, DESeq, DBI, RMySQL (>= 0.6-0)
Suggests:
Description: The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time
License: GPL-2
URL:
biocViews: Annotation, Bioinformatics, ReportWriting, Transcription,
        GeneExpression, DifferentialExpression,
        HighThroughputSequencing, RNAseq, SAGE, Visualization
Collate: zzz.R utils.R plots.R NucleotideDistr.R SeqReads.R NDplots.R
        NDtransforms.R bam2sig.R parseGff3.R pipelines.R
        normalizations.R measures.R generators.R camelWrapper.R
Packaged: 2013-04-04 08:00:14 UTC; biocbuild
