# Big Data Management of Genome-wide Sequencing Variants

## Documentation for package ‘SeqArray’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

SeqArray-package | Big Data Management of Genome-wide Sequencing Variants
alt-method | SeqVarGDSClass
asVCF-method | SeqVarGDSClass
filt-method | SeqVarGDSClass
granges-method | SeqVarGDSClass
qual-method | SeqVarGDSClass
ref-method | SeqVarGDSClass
seqApply | Apply Functions Over Array Margins
SeqArray | Big Data Management of Genome-wide Sequencing Variants
seqClose | Close a SeqArray object
seqClose-method | Close a SeqArray object
seqCompress.Option | Compression Options for Importing VCF File(s)
seqDelete | Delete variables in a Sequencing GDS File
seqExampleFileName | Example GDS file
seqGDS2VCF | Convert to a VCF file
seqGetData | Get Data from a Sequencing GDS file
seqGetFilter | Get the Filter of Samples and Variants
seqInfoNewVar | Add a variable to the INFO field
seqMerge | Merge Multiple Sequencing GDS Files
seqOpen | Open a Sequencing GDS File
seqParallel | Apply Functions in Parallel
seqSetFilter | Set a filter to sample or variant
seqSlidingWindow | Apply functions via a sliding window over variants
seqSummary | Get the summary of a GDS file
seqTranspose | Transpose Data Array
SeqVarGDSClass | SeqVarGDSClass
SeqVarGDSClass-class | SeqVarGDSClass
seqVCF.Header | Parse the header of a VCF file
seqVCF.SampID | Get the sample IDs of a VCF file
seqVCF2GDS | Reformat VCF files