# OSAT: Optimal Sample Assignment Tool

## Documentation for package ‘OSAT’ version 1.10.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

BeadChip-class | Class '"BeadChip"'
BeadChip96ToMSA4MAP | Class '"MSAroboticPlate"'
BeadPlate-class | Class '"BeadPlate"'
cid-method | Class '"gContainer"'
create.experiment.setup | Class '"gExperimentSetup"'
create.optimized.setup | Create optimized setup
dim-method | Class '"gArray"'
exclude<- | Class '"gContainer"'
exclude<--method | Class '"gContainer"'
gArray-class | Class '"gArray"'
gAssembly-class | Class '"gAssembly"'
gc | R data object based on example file.
gContainer-class | Class '"gContainer"'
GenotypingChip | Class '"BeadChip"'
get.experiment.setup | Get experiment assignment after optimization.
get.gAssembly-method | Class '"gContainer"'
get.gAssembly-method | Class '"gExperimentSetup"'
getLayout | Class '"gArray"'
getLayout-method | Class '"BeadChip"'
getLayout-method | Class '"MSAroboticPlate"'
getLayout-method | Class '"gArray"'
getLayout-method | Class '"gAssembly"'
getLayout-method | Class '"gContainer"'
getLayout-method | Class '"gPlate"'
getLayout-method | Class '"gSlide"'
gExperimentSetup-class | Class '"gExperimentSetup"'
gPlate-class | Class '"gPlate"'
gs | R data object based on example file.
gSample-class | Class 'gSample'
gSetup | R data object based on example file.
gSetup2 | R data object based on example file.
gSlide-class | Class '"gSlide"'
IlluminaBeadChip | Class '"BeadChip"'
IlluminaBeadChip24Plate | Class '"BeadPlate"'
IlluminaBeadChip48Plate | Class '"BeadPlate"'
IlluminaBeadChip96Plate | Class '"BeadPlate"'
initialize-method | Class '"MSAroboticPlate"'
initialize-method | Class '"gAssembly"'
initialize-method | Class '"gContainer"'
initialize-method | Class '"gExperimentSetup"'
initialize-method | Class '"gPlate"'
initialize-method | Class 'gSample'
initialize-method | Class '"gSlide"'
map.to.MSA | Class '"MSAroboticPlate"'
map.to.MSA-method | Class '"MSAroboticPlate"'
metadata | Class '"gArray"'
metadata-method | Class '"gArray"'
metadata-method | Class '"gAssembly"'
metadata-method | Class '"gContainer"'
metadata-method | Class '"gExperimentSetup"'
metadata<- | Class '"gArray"'
metadata<--method | Class '"gArray"'
metadata<--method | Class '"gAssembly"'
metadata<--method | Class '"gContainer"'
metadata<--method | Class '"gExperimentSetup"'
MSA4.plate | Class '"MSAroboticPlate"'
MSAroboticPlate-class | Class '"MSAroboticPlate"'
multi.barplot | multi.barplot
multi.chisq.test | multi.chisq.test
ncol-method | Class '"gArray"'
nrow-method | Class '"gArray"'
optimal.block | optimal.block
optimal.shuffle | optimal.shuffle
pheno | R data object based on example file.
plot-method | Methods for Function 'plot'
plot-methods | Methods for Function 'plot'
predefined | Show predefined objects in the package.
QC | QC
samples-method | Class '"gExperimentSetup"'
setup.container | Class '"gContainer"'
setup.sample | Class 'gSample'
show-method | Class '"MSAroboticPlate"'
show-method | Class '"gAssembly"'
show-method | Class '"gContainer"'
show-method | Class '"gExperimentSetup"'
show-method | Class '"gPlate"'
show-method | Class 'gSample'
show-method | Class '"gSlide"'
summary | Class 'gSample'
summary-method | Class '"gExperimentSetup"'
summary-method | Class 'gSample'