Package: RIPSeeker
Type: Package
Title: RIPSeeker: a statistical package for identifying
        protein-associated transcripts from RIP-seq experiments
Version: 1.2.0
Date: 2013-Apr-13
Author: Yue Li
Maintainer: Yue Li <yueli@cs.toronto.edu>
Description: Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.
Depends: R (>= 2.15), methods, IRanges, GenomicRanges, rtracklayer,
        Rsamtools
Suggests: biomaRt, ChIPpeakAnno, parallel, GenomicFeatures
License: GPL-2
URL: http://www.cs.utoronto.ca/~yueli/software.html
biocViews: HighThroughputSequencing, RIPseq
Lazyload: yes
Packaged: 2013-10-15 08:09:38 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 15:56:49 UTC; windows
