RedeR-package	RedeR-package
addEdgeBetweenContainers	addEdgeBetweenContainers
addEdgeBetweenContainers,RedPort-method	addEdgeBetweenContainers
addEdges	addEdges
addEdges,RedPort-method	addEdges
addGraph	addGraph
addGraph,RedPort-method	addGraph
addLegend.color	addLegend
addLegend.color,RedPort-method	addLegend
addLegend.shape	addLegend
addLegend.shape,RedPort-method	addLegend
addLegend.size	addLegend
addLegend.size,RedPort-method	addLegend
addNodes	addNodes
addNodes,RedPort-method	addNodes
addSeries	addSeries
addSeries,RedPort-method	addSeries
addSubgraph	addSubgraph
addSubgraph,RedPort-method	addSubgraph
addSubgraph.list	addSubgraph.list
addSubgraph.list,RedPort-method	addSubgraph.list
att.mape	att
att.mapv	att
att.sete	att
att.setv	att
calld	calld
calld,RedPort-method	calld
Carroll2006	RedeR.data
cea	cea
deleteEdges	deleteEdges
deleteEdges,RedPort-method	deleteEdges
deleteNodes	deleteNodes
deleteNodes,RedPort-method	deleteNodes
deletePlugin	deletePlugin
deletePlugin,RedPort-method	deletePlugin
deleteSelectedEdges	deleteSelectedEdges
deleteSelectedEdges,RedPort-method	deleteSelectedEdges
deleteSelectedNodes	deleteSelectedNodes
deleteSelectedNodes,RedPort-method	deleteSelectedNodes
deSelectEdges	deSelectEdges
deSelectEdges,RedPort-method	deSelectEdges
deSelectGraph	deSelectGraph
deSelectGraph,RedPort-method	deSelectGraph
deSelectNodes	deSelectNodes
deSelectNodes,RedPort-method	deSelectNodes
duplicateGraph	duplicateGraph
duplicateGraph,RedPort-method	duplicateGraph
dynwin	dynwin
dynwin,RedPort-method	dynwin
ER.deg	RedeR.data
ER.limma	RedeR.data
exitd	exitd
exitd,RedPort-method	exitd
getContainerComponets	getContainerComponets
getContainerComponets,RedPort-method	getContainerComponets
getEdgeIDs	getEdgeIDs
getEdgeIDs,RedPort-method	getEdgeIDs
getEdges	getEdges
getEdges,RedPort-method	getEdges
getGraph	getGraph
getGraph,RedPort-method	getGraph
getNodeIDs	getNodeIDs
getNodeIDs,RedPort-method	getNodeIDs
getNodes	getNodes
getNodes,RedPort-method	getNodes
getSourceEdgeIDs	getSourceEdgeIDs
getSourceEdgeIDs,RedPort-method	getSourceEdgeIDs
getTargetEdgeIDs	getTargetEdgeIDs
getTargetEdgeIDs,RedPort-method	getTargetEdgeIDs
gtoy.rm	gtoy.rm
hs.inter	RedeR.data
isDynamicsActive	isDynamicsActive
isDynamicsActive,RedPort-method	isDynamicsActive
mergeNodes	mergeNodes
mergeNodes,RedPort-method	mergeNodes
mergeOutEdges	mergeOutEdges
mergeOutEdges,RedPort-method	mergeOutEdges
nesthc	nesthc
nesthc,RedPort-method	nesthc
nestNodes	nestNodes
nestNodes,RedPort-method	nestNodes
ping	ping
ping,RedPort-method	ping
PluginBuilder	PluginBuilder
PluginBuilder-class	PluginBuilder-class
pluginParser	pluginParser
RedeR	RedeR-package
rederexpresspost	rederpost
rederpost	rederpost
RedPort	RedPort
RedPort-class	RedPort-class
relax	relax
relax,RedPort-method	relax
resetd	resetd
resetd,RedPort-method	resetd
selectAllEdges	selectAllEdges
selectAllEdges,RedPort-method	selectAllEdges
selectAllNodes	selectAllNodes
selectAllNodes,RedPort-method	selectAllNodes
selectEdges	selectEdges
selectEdges,RedPort-method	selectEdges
selectGraph	selectGraph
selectGraph,RedPort-method	selectGraph
selectNodes	selectNodes
selectNodes,RedPort-method	selectNodes
setArrowDirection	setArrowDirection
setArrowDirection,RedPort-method	setArrowDirection
subg	subg
submitPlugin	submitPlugin
submitPlugin,RedPort-method	submitPlugin
updateContainerSize	updateContainerSize
updateContainerSize,RedPort-method	updateContainerSize
updateGraph	updateGraph
updateGraph,RedPort-method	updateGraph
updatePlugins	updatePlugins
updatePlugins,RedPort-method	updatePlugins
version	version
version,RedPort-method	version
