Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes, 
	predict coding outcomes
Version: 1.8.13
Author: Valerie Obenchain, Martin Morgan, Michael Lawrence with
	contributions from Stephanie Gogarten. 
Maintainer: Valerie Obenchain <vobencha@fhcrc.org>
License: Artistic-2.0
biocViews: DataImport, Sequencing, HighThroughputSequencing, SNP,
        Annotation, Genetics, Homo_sapiens
Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.7.7), GenomicRanges
        (>= 1.13.51), Rsamtools (>= 1.13.47), IRanges (>= 1.19.36),
        XVector
Imports: methods, BiocGenerics, IRanges, XVector, Biostrings (>=
        2.29.2), Biobase, Rsamtools, AnnotationDbi (>= 1.17.11),
        zlibbioc, BSgenome, GenomicFeatures (>= 1.13.11), DBI, utils,
        rtracklayer
Suggests: RUnit, BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        SNPlocs.Hsapiens.dbSNP.20110815,
        SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
        PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle
LinkingTo: IRanges, XVector, Biostrings, Rsamtools
LazyLoad: yes
Packaged: 2014-03-13 07:55:44 UTC; biocbuild
Built: R 3.0.3; i386-w64-mingw32; 2014-03-13 14:18:56 UTC; windows
Archs: i386, x64
