Package: flowMap
Title: A probabilistic algorithm for matching and comparing multiple
        flow cytometry samples
Description: This package provides an algorithm to compare and match cell populations across multiple flow cytometry samples. The method is based on the Friedman-Rafsky test, a nonparametric multivariate statistical test, where two cell distributions match if they occupy a similar feature space. The algorithm allows the users to specify a reference sample for comparison or to construct a reference sample from the available data. The output of the algorithm is a set of text files where the cell population labels are replaced by a metaset of population labels, generated from the matching process.
Version: 1.0.0
Authors@R: c(person("Chiaowen Hsiao",role=c("aut","cre")
    ,email="chsiao@umiacs.umd.edu"),
    person("Yu Qian",role="aut",email="mqian@jcvi.org"))
Author: Chiaowen Joyce Hsiao and Yu Qian
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com>
Depends: R (>= 3.0.1), ade4(>= 1.5-2), doParallel(>= 1.0.3), abind(>=
        1.4.0), reshape2(>= 1.2.2), ggplot2(>= 0.9.3.1), scales(>=
        0.2.3), methods (>= 2.14),
biocViews: MultipleComparisons, FlowCytometry
License: GPL (>=2)
LazyData: true
Packaged: 2013-10-15 08:28:26 UTC; biocbuild
Collate: 'AllClasses.r' 'AllGenerics.r' 'accessors.r' 'show-methods.r'
        'flowMatch-package.r' 'getFRvalsPerm.r' 'getMatched.r'
        'getSomePops.r' 'makeCrossMap.r' 'makeRefMap.r'
        'makeRefSample.r' 'makeSampleInfo.r' 'permutePops.r'
        'statCrossLists.r' 'getFR.r' 'getFRest.r' 'getFRmat.r'
        'FRmapping.r' 'FRmappingSimple.r' 'utils.R'
Built: R 3.0.2; ; 2013-10-15 15:14:53 UTC; windows
