Package: phenoTest
Type: Package
Title: Tools to test association between gene expression and phenotype
        in a way that is efficient, structured, fast and scalable. We
        also provide tools to do GSEA (Gene set enrichment analysis)
        and copy number variation.
Version: 1.10.0
Date: 2013-05-29
Author: Evarist Planet
Maintainer: Evarist Planet <evarist.planet@irbbarcelona.org>
Description: Tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.
License: GPL (>=2)
Depends: R (>= 2.12.0), Biobase, methods, annotate, Heatplus, BMA,
        ggplot2, gridExtra
Imports: survival, limma, Hmisc, gplots, Category, AnnotationDbi,
        hopach, biomaRt, GSEABase, genefilter, xtable, annotate, mgcv,
        SNPchip, hgu133a.db, HTSanalyzeR, ellipse
Suggests: GSEABase, KEGG.db, GO.db
Enhances: parallel, org.Ce.eg.db, org.Mm.eg.db, org.Rn.eg.db,
        org.Hs.eg.db, org.Dm.eg.db
LazyLoad: yes
biocViews: Microarray, Bioinformatics, DifferentialExpression,
        MultipleComparisons, Clustering, Classification
Packaged: 2013-10-15 07:37:43 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 15:43:47 UTC; windows
