# Encapsulates X!Tandem in R.

## Documentation for package ‘rTANDEM’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

rTANDEM-package | An R encapsulation of X!TANDEM ('Jackhammer' release, 2013.06.15)
GetDegeneracy | Extract information from rTANDEM result object
GetParamFromXML | Convert X!Tandem xml files to R objects and vice versa
GetPeptides | Extract information from rTANDEM result object
GetProteins | Extract information from rTANDEM result object
GetResultsFromXML | Convert X!Tandem xml files to R objects and vice versa
GetTaxoFromXML | Convert X!Tandem xml files to R objects and vice versa
rTANDEM | Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files
rtandem | Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files
rTParam | rTANDEM S3 and S4 classes
rTResult | rTANDEM S3 and S4 classes
rTResult-class | Class '"rTResult"'
rTTaxo | rTANDEM S3 and S4 classes
setParamValue | rTANDEM S3 and S4 classes
tandem | Calls X!TANDEM ('Jackhammer' release, 2013.06.15) from R objects or xml files
WriteParamToXML | Convert X!Tandem xml files to R objects and vice versa
WriteTaxoToXML | Convert X!Tandem xml files to R objects and vice versa