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Rsamtools, AnnotationDbi (>= 1.17.11), zlibbioc, BSgenome, GenomicFeatures (>= 1.13.11), DBI, utils, rtracklayer LinkingTo: IRanges, XVector, Biostrings, Rsamtools Suggests: RUnit, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132, PolyPhen.Hsapiens.dbSNP131, snpStats, ggplot2, BiocStyle License: Artistic-2.0 MD5sum: 208adf9e80c90f4b636ca3cd8b0558bf NeedsCompilation: yes Package: VariantTools Version: 1.4.5 Depends: IRanges (>= 1.19.34), GenomicRanges (>= 1.13.43), VariantAnnotation (>= 1.7.35), methods Imports: IRanges, Rsamtools (>= 1.11.10), GenomicRanges, BiocGenerics, Biostrings, parallel, gmapR (>= 1.3.8), GenomicFeatures, VariantAnnotation, methods, Matrix, rtracklayer, BiocParallel Suggests: RUnit, LungCancerLines (>= 0.0.6), RBGL License: Artistic-2.0 MD5sum: 92564f19c586ba034e8be7b3e7f971eb NeedsCompilation: no Package: vbmp Version: 1.30.0 Depends: R (>= 2.10) Suggests: 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methods, stats, utils, mvtnorm Suggests: siggenes, genefilter, MASS, RColorBrewer, GeneMeta, RUnit Enhances: coda License: LGPL-2 MD5sum: f5553fdc8c531d0745b99e4345e77fa9 NeedsCompilation: yes Package: xmapbridge Version: 1.20.0 Depends: R (>= 2.0), methods Suggests: RUnit, RColorBrewer License: LGPL-3 MD5sum: 5bd757bb18741cae279de4c66604b53d NeedsCompilation: no Package: xps Version: 1.22.2 Depends: R (>= 2.6.0), methods, utils Suggests: tools License: GPL (>= 2.0) MD5sum: e0b7cdcc2b01f21848cd4c8152d7274a NeedsCompilation: yes Package: XVector Version: 0.2.0 Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.7.2), IRanges (>= 1.19.36) Imports: methods, BiocGenerics, IRanges LinkingTo: IRanges Suggests: Biostrings, drosophila2probe, RUnit License: Artistic-2.0 MD5sum: d5c6799b09b67f1fa5942ed6d60e5452 NeedsCompilation: yes Package: yaqcaffy Version: 1.22.0 Depends: simpleaffy (>= 2.19.3), methods Imports: stats4 Suggests: MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk License: 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