CHANGES IN VERSION 1.1.4

  o Support for D. melanogaster genome (dm3)

  o All genomes (dm3, hg19, mm9, mm10, and rn4) have the following locus definitions
    o 1kb, 5kb, 10kb, >10kb, introns, exons, nearest_gene, and nearest_tss

  o New example histone data set, peaks_H3K4me3_GM12878, based on hg19.

  o New gene sets from Reactome for human, mouse, and rat.

CHANGES IN VERSION 1.0
----------------------

PKG FEATURES

  o Supporting package containing data for use with the chipenrich package. 

  o Contains genesets for many databases including Biocarta, KEGG, OMIM, etc.

  o Contains gene locus definitions (for assigning ChIP-seq peaks to genes)

  o Contains mappability estimates for each gene locus definition

  o Example ChIP-seq peak datasets 

CHANGES IN VERSION 0.99.3
-------------------------

NEW FEATURES

  o Locus definitions for mm10

BUG FIXES

  o Mouse mappability gene IDs were incorrect for some locus definitions and 
    would cause a crash if used

CHANGES IN VERSION 0.99.2
-------------------------

USER-VISIBLE CHANGES

  o Updated to switch from Depends: to Imports: per bioconductor guidelines
  o Updated license to GPL-3
  o Updated NEWS format per bioconductor guidelines
  o Made several man pages runnable (removed donttest)

CHANGES IN VERSION 0.99.1
-------------------------

USER-VISIBLE CHANGES

  o Minor updates to documentation and DESCRIPTION

CHANGES IN VERSION 0.99.0
-------------------------

NEW FEATURES

  o Initial submission to bioconductor

CHANGES IN VERSION 0.4.4
------------------------

USER-VISIBLE CHANGES

  o Updated 1kb/5kb locus definitions using new code

CHANGES IN VERSION 0.4.3
------------------------

BUG FIXES

  o Fixed 1kb/5kb locus definitions (they were previously the same by accident!)

CHANGES IN VERSION 0.4.2
------------------------

NEW FEATURES

  o Added support for rat (locus definitions, gene sets from GO and ConceptGen/LRpath)

BUG FIXES

  o Fixed nearest gene mappabilities for human and mouse

CHANGES IN VERSION 0.4.1
------------------------

USER-VISIBLE CHANGES

  o Changed TSSs to come from knownGenes instead of refFlat

CHANGES IN VERSION 0.4
----------------------

USER-VISIBLE CHANGES

  o Changed format of TSS object to include strand information
  o Updated cytoband to use Bioconductor (org.Mm.eg.db) for mouse
