# Annotation for the copy number alteration association and enrichment analyses with facopy

## Documentation for package ‘facopy.annot’ version 1.0.0

- DESCRIPTION file.

## Help Pages

F H M

facopy.annot-package | Companion annotation package for facopy

## -- F --

facopy_biocarta | Biocarta Pathways with symbol identifiers
facopy_kegg | kegg Pathways with symbol identifiers
facopy_msigdb | facopy MSigDB Data
facopy_msigdbNames | facopy MSigDB Data Names
facopy_reactome | reactome Pathways with symbol identifiers

## -- H --

hg18_armLimits | hg18_armLimits
hg18_db_gsk_bladder | hg18_db_gsk_bladder
hg18_db_gsk_blood | hg18_db_gsk_blood
hg18_db_gsk_bone | hg18_db_gsk_bone
hg18_db_gsk_brain | hg18_db_gsk_brain
hg18_db_gsk_breast | hg18_db_gsk_breast
hg18_db_gsk_cervix | hg18_db_gsk_cervix
hg18_db_gsk_cns | hg18_db_gsk_cns
hg18_db_gsk_colon | hg18_db_gsk_colon
hg18_db_gsk_connective_tissue | hg18_db_gsk_connective_tissue
hg18_db_gsk_esophagus | hg18_db_gsk_esophagus
hg18_db_gsk_eye | hg18_db_gsk_eye
hg18_db_gsk_kidney | hg18_db_gsk_kidney
hg18_db_gsk_liver | hg18_db_gsk_liver
hg18_db_gsk_lung | hg18_db_gsk_lung
hg18_db_gsk_muscle | hg18_db_gsk_muscle
hg18_db_gsk_ovary | hg18_db_gsk_ovary
hg18_db_gsk_pancreas | hg18_db_gsk_pancreas
hg18_db_gsk_pharynx | hg18_db_gsk_pharynx
hg18_db_gsk_placenta | hg18_db_gsk_placenta
hg18_db_gsk_prostate | hg18_db_gsk_prostate
hg18_db_gsk_rectum | hg18_db_gsk_rectum
hg18_db_gsk_sarcoma | hg18_db_gsk_sarcoma
hg18_db_gsk_stomach | hg18_db_gsk_stomach
hg18_db_gsk_synovium | hg18_db_gsk_synovium
hg18_db_gsk_thyroid | hg18_db_gsk_thyroid
hg18_db_gsk_uterus | hg18_db_gsk_uterus
hg18_db_nci60 | hg18_db_nci60
hg18_db_tcga_blca | hg18_db_tcga_blca
hg18_db_tcga_brca | hg18_db_tcga_brca
hg18_db_tcga_cesc | hg18_db_tcga_cesc
hg18_db_tcga_coad | hg18_db_tcga_coad
hg18_db_tcga_gbm | hg18_db_tcga_gbm
hg18_db_tcga_hnsc | hg18_db_tcga_hnsc
hg18_db_tcga_kirc | hg18_db_tcga_kirc
hg18_db_tcga_kirp | hg18_db_tcga_kirp
hg18_db_tcga_lgg | hg18_db_tcga_lgg
hg18_db_tcga_lihc | hg18_db_tcga_lihc
hg18_db_tcga_luad | hg18_db_tcga_luad
hg18_db_tcga_lusc | hg18_db_tcga_lusc
hg18_db_tcga_ov | hg18_db_tcga_ov
hg18_db_tcga_prad | hg18_db_tcga_prad
hg18_db_tcga_read | hg18_db_tcga_read
hg18_db_tcga_stad | hg18_db_tcga_stad
hg18_db_tcga_thca | hg18_db_tcga_thca
hg18_db_tcga_ucec | hg18_db_tcga_ucec
hg18_feature_cancergene | hg18_feature_cancergene
hg18_feature_ensembl | hg18_feature_ensembl
hg18_feature_lincRNA | hg18_feature_lincRNA
hg18_feature_mirnas | hg18_feature_mirnas
hg18_feature_oncogene | hg18_feature_oncogene
hg18_feature_tumorsupressor | hg18_feature_tumorsupressor
hg19_armLimits | hg19_armLimits
hg19_db_gsk_bladder | hg19_db_gsk_bladder
hg19_db_gsk_blood | hg19_db_gsk_blood
hg19_db_gsk_bone | hg19_db_gsk_bone
hg19_db_gsk_brain | hg19_db_gsk_brain
hg19_db_gsk_breast | hg19_db_gsk_breast
hg19_db_gsk_cervix | hg19_db_gsk_cervix
hg19_db_gsk_cns | hg19_db_gsk_cns
hg19_db_gsk_colon | hg19_db_gsk_colon
hg19_db_gsk_connective_tissue | hg19_db_gsk_connective_tissue
hg19_db_gsk_esophagus | hg19_db_gsk_esophagus
hg19_db_gsk_eye | hg19_db_gsk_eye
hg19_db_gsk_kidney | hg19_db_gsk_kidney
hg19_db_gsk_liver | hg19_db_gsk_liver
hg19_db_gsk_lung | hg19_db_gsk_lung
hg19_db_gsk_muscle | hg19_db_gsk_muscle
hg19_db_gsk_ovary | hg19_db_gsk_ovary
hg19_db_gsk_pancreas | hg19_db_gsk_pancreas
hg19_db_gsk_pharynx | hg19_db_gsk_pharynx
hg19_db_gsk_placenta | hg19_db_gsk_placenta
hg19_db_gsk_prostate | hg19_db_gsk_prostate
hg19_db_gsk_rectum | hg19_db_gsk_rectum
hg19_db_gsk_sarcoma | hg19_db_gsk_sarcoma
hg19_db_gsk_stomach | hg19_db_gsk_stomach
hg19_db_gsk_synovium | hg19_db_gsk_synovium
hg19_db_gsk_thyroid | hg19_db_gsk_thyroid
hg19_db_gsk_uterus | hg19_db_gsk_uterus
hg19_db_nci60 | hg19_db_nci60
hg19_db_tcga_blca | hg19_db_tcga_blca
hg19_db_tcga_brca | hg19_db_tcga_brca
hg19_db_tcga_cesc | hg19_db_tcga_cesc
hg19_db_tcga_coad | hg19_db_tcga_coad
hg19_db_tcga_gbm | hg19_db_tcga_gbm
hg19_db_tcga_hnsc | hg19_db_tcga_hnsc
hg19_db_tcga_kirc | hg19_db_tcga_kirc
hg19_db_tcga_kirp | hg19_db_tcga_kirp
hg19_db_tcga_lgg | hg19_db_tcga_lgg
hg19_db_tcga_lihc | hg19_db_tcga_lihc
hg19_db_tcga_luad | hg19_db_tcga_luad
hg19_db_tcga_lusc | hg19_db_tcga_lusc
hg19_db_tcga_ov | hg19_db_tcga_ov
hg19_db_tcga_prad | hg19_db_tcga_prad
hg19_db_tcga_read | hg19_db_tcga_read
hg19_db_tcga_stad | hg19_db_tcga_stad
hg19_db_tcga_thca | hg19_db_tcga_thca
hg19_db_tcga_ucec | hg19_db_tcga_ucec
hg19_feature_cancergene | hg19_feature_cancergene
hg19_feature_ensembl | hg19_feature_ensembl
hg19_feature_lincRNA | hg19_feature_lincRNA
hg19_feature_mirnas | hg19_feature_mirnas
hg19_feature_oncogene | hg19_feature_oncogene
hg19_feature_tumorsupressor | hg19_feature_tumorsupressor

## -- M --

mm8_armLimits | mm8_armLimits
mm8_feature_ensembl | mm8_feature_ensembl
mm8_feature_mirnas | mm8_feature_mirnas