Package: annotation Version: 0.99.95638 Depends: R (>= 3.1.0) Imports: TxDb.Mmusculus.UCSC.mm10.ensGene, ensemblVEP, org.Hs.eg.db, parathyroidSE, GO.db, hgu95av2.db, TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens, AnnotationHub, biomaRt, BSgenome.Hsapiens.UCSC.hg19, TxDb.Athaliana.BioMart.plantsmart22 License: Artistic-2.0 MD5sum: d182a909c509e567e589f25347c40c47 NeedsCompilation: no Package: arrays Version: 0.1 Depends: R (>= 3.0.0) Suggests: affy, limma, hgfocuscdf License: Artistic-2.0 MD5sum: dd262772dcd2178ad06a9090cf978c2f NeedsCompilation: no Package: eQTL Version: 0.99.96137 Depends: R (>= 3.1.0) Imports: snpStats, scatterplot3d, GGtools, yri1kgv, lumiHumanAll.db, lumi, foreach, doParallel, parallel, biglm, rmeta License: Artistic-2.0 MD5sum: 5cc7013f6eece394f939aac89ee49e54 NeedsCompilation: no Package: generegulation Version: 0.99.96013 Depends: R (>= 3.1.0) Imports: MotifDb, S4Vectors, seqLogo, motifStack, Biostrings, GenomicFeatures, org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Scerevisiae.UCSC.sacCer3.sgdGene License: Artistic-2.0 MD5sum: 9d284c9ea2433c836980865998cb7170 NeedsCompilation: no Package: highthroughputassays Version: 0.99.92858 Depends: R (>= 3.1.0) Imports: flowCore, flowStats, flowViz License: Artistic-2.0 MD5sum: 14e977c9e28e3dba2fe03ea743fb319d NeedsCompilation: no Package: rnaseqGene Version: 0.99.101310 Depends: R (>= 3.1.0) Imports: BiocStyle, knitr, airway, Rsamtools, GenomicFeatures, GenomicAlignments, DESeq2, gplots, RColorBrewer, PoiClaClu, ggplot2, genefilter, AnnotationDbi, org.Hs.eg.db, Gviz, sva, fission License: Artistic-2.0 MD5sum: 1f17848bb6de7486e7e7837a80ad4a5b NeedsCompilation: no Package: variants Version: 0.99.94455 Depends: R (>= 3.1.0) Imports: VariantAnnotation, cgdv17, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19, PolyPhen.Hsapiens.dbSNP131 License: Artistic-2.0 MD5sum: bbba1e67998a9a4bad9f7cc24bdc74ff NeedsCompilation: no