Package: annotation
Version: 0.99.105284
Depends: R (>= 3.2.0)
Imports: VariantAnnotation, AnnotationHub,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db,
        BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens, BSgenome, biomaRt,
        TxDb.Athaliana.BioMart.plantsmart22
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: fae127dcce31f12d8fcbc13a20521565

Package: arrays
Version: 0.1
Depends: R (>= 3.0.0)
Suggests: affy, limma, hgfocuscdf, knitr
License: Artistic-2.0
MD5sum: eec540d6306d531bb82e9017261fb993

Package: chipseqDB
Version: 0.99.108324
Depends: R (>= 3.2.1)
Imports: BiocStyle, knitr, Rsubread, Rsamtools, rtracklayer, csaw,
        statmod, locfit, edgeR, org.Mm.eg.db,
        TxDb.Mmusculus.UCSC.mm10.knownGene, ChIPpeakAnno, Gviz
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: 6821883b2355dfa44cf650941e83393b

Package: eQTL
Version: 0.99.107438
Depends: R (>= 3.2.1)
Imports: snpStats, scatterplot3d, GGtools, yri1kgv, lumiHumanAll.db,
        lumi, foreach, doParallel, parallel, biglm, rmeta
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: 8b6bd7cf5ee6d8932ccc648b387e0a16

Package: generegulation
Version: 0.99.103982
Depends: R (>= 3.2.0)
Imports: MotifDb, S4Vectors, seqLogo, motifStack, Biostrings,
        GenomicFeatures, org.Sc.sgd.db,
        BSgenome.Scerevisiae.UCSC.sacCer3,
        TxDb.Scerevisiae.UCSC.sacCer3.sgdGene
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: aff6b2f6e0d5da78e216f6b3cc5f312d

Package: liftOver
Version: 0.99.96282
Depends: R (>= 3.2.0)
Imports: gwascat, rtracklayer
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: 5373f5a8f34f424f68264b07290cb397

Package: proteomics
Version: 0.99.104813
Depends: R (>= 3.2.0)
Imports: knitr, BiocInstaller, RforProteomics, nloptr, mzR, mzID,
        MSnID, MSnbase, rpx, MLInterfaces, pRoloc, pRolocdata,
        MSGFplus, rols, hpar, lattice
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: d9b809083a344c651fcb3530ffaad2b5

Package: rnaseqGene
Version: 0.99.108571
Depends: R (>= 3.2.1)
Imports: BiocStyle, knitr, rmarkdown, airway, Rsamtools,
        GenomicFeatures, GenomicAlignments, BiocParallel, DESeq2,
        pheatmap, RColorBrewer, PoiClaClu, ggplot2, genefilter,
        AnnotationDbi, org.Hs.eg.db, Gviz, sva, fission
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: 737e611138df8cc13a86f9a82241b091

Package: sequencing
Version: 0.99.106465
Depends: R (>= 3.2.1)
Imports: Biostrings, Rsamtools, BSgenome.Hsapiens.UCSC.hg19,
        GenomicRanges, GenomicAlignments, RNAseqData.HNRNPC.bam.chr14,
        VariantAnnotation, rtracklayer
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: 57b52ea7f27bf220c207e306007a22b7

Package: variants
Version: 0.99.104808
Depends: R (>= 3.2.0)
Imports: VariantAnnotation, cgdv17, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
        ensemblVEP
Suggests: knitr, knitcitations
License: Artistic-2.0
MD5sum: 3640511c8041ba0f8ac62f8296ede3ad