Package: annotation
Version: 0.99.95638
Depends: R (>= 3.1.0)
Imports: TxDb.Mmusculus.UCSC.mm10.ensGene, ensemblVEP, org.Hs.eg.db,
        parathyroidSE, GO.db, hgu95av2.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene, Homo.sapiens, AnnotationHub,
        biomaRt, BSgenome.Hsapiens.UCSC.hg19,
        TxDb.Athaliana.BioMart.plantsmart22
License: Artistic-2.0

Package: arrays
Version: 0.1
Depends: R (>= 3.0.0)
Suggests: affy, limma, hgfocuscdf
License: Artistic-2.0

Package: eQTL
Version: 0.99.107438
Depends: R (>= 3.2.1)
Imports: snpStats, scatterplot3d, GGtools, yri1kgv, lumiHumanAll.db,
        lumi, foreach, doParallel, parallel, biglm, rmeta
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: generegulation
Version: 0.99.96013
Depends: R (>= 3.1.0)
Imports: MotifDb, S4Vectors, seqLogo, motifStack, Biostrings,
        GenomicFeatures, org.Sc.sgd.db,
        BSgenome.Scerevisiae.UCSC.sacCer3,
        TxDb.Scerevisiae.UCSC.sacCer3.sgdGene
License: Artistic-2.0

Package: liftOver
Version: 0.99.96282
Depends: R (>= 3.1.0)
Imports: gwascat, rtracklayer
License: Artistic-2.0

Package: proteomics
Version: 0.99.98521
Depends: R (>= 3.1.0)
Imports: knitr, BiocInstaller, RforProteomics, nloptr, mzR, mzID,
        MSnID, MSnbase, rpx, MLInterfaces, pRoloc, pRolocdata,
        MSGFplus, rols, hpar, lattice
License: Artistic-2.0

Package: rnaseqGene
Version: 0.99.108571
Depends: R (>= 3.2.1)
Imports: BiocStyle, knitr, rmarkdown, airway, Rsamtools,
        GenomicFeatures, GenomicAlignments, BiocParallel, DESeq2,
        pheatmap, RColorBrewer, PoiClaClu, ggplot2, genefilter,
        AnnotationDbi, org.Hs.eg.db, Gviz, sva, fission
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: sequencing
Version: 0.99.106465
Depends: R (>= 3.2.1)
Imports: Biostrings, Rsamtools, BSgenome.Hsapiens.UCSC.hg19,
        GenomicRanges, GenomicAlignments, RNAseqData.HNRNPC.bam.chr14,
        VariantAnnotation, rtracklayer
Suggests: knitr, knitcitations
License: Artistic-2.0

Package: variants
Version: 0.99.104742
Depends: R (>= 3.2.0)
Imports: VariantAnnotation, cgdv17, org.Hs.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
        ensemblVEP
Suggests: knitr, knitcitations
License: Artistic-2.0