Package: annotation Version: 0.99.105284 Depends: R (>= 3.2.0) Imports: VariantAnnotation, AnnotationHub, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db, BSgenome.Hsapiens.UCSC.hg19, Homo.sapiens, BSgenome, biomaRt, TxDb.Athaliana.BioMart.plantsmart22 Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: e03ab309f58a4aab02ce6f6a5b4bc63e NeedsCompilation: no Package: arrays Version: 0.1 Depends: R (>= 3.0.0) Suggests: affy, limma, hgfocuscdf, knitr License: Artistic-2.0 MD5sum: 51281cdfb3d8f2ed486cef5293debc01 NeedsCompilation: no Package: chipseqDB Version: 0.99.108324 Depends: R (>= 3.2.1) Imports: BiocStyle, knitr, Rsubread, Rsamtools, rtracklayer, csaw, statmod, locfit, edgeR, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.knownGene, ChIPpeakAnno, Gviz Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: 5ea0d60ef7273d4838f073bd026dc484 NeedsCompilation: no Package: eQTL Version: 0.99.107438 Depends: R (>= 3.2.1) Imports: snpStats, scatterplot3d, GGtools, yri1kgv, lumiHumanAll.db, lumi, foreach, doParallel, parallel, biglm, rmeta Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: e83aa944875a4f8e0f64854566ef8b59 NeedsCompilation: no Package: generegulation Version: 0.99.103982 Depends: R (>= 3.2.0) Imports: MotifDb, S4Vectors, seqLogo, motifStack, Biostrings, GenomicFeatures, org.Sc.sgd.db, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Scerevisiae.UCSC.sacCer3.sgdGene Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: dd7e7273fa72bab12261c405ac6683a7 NeedsCompilation: no Package: highthroughputassays Version: 0.99.92858 Depends: R (>= 3.2.0) Imports: flowCore, flowStats, flowViz Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: d5e4dd0b59c8e58990044153a264e0db NeedsCompilation: no Package: liftOver Version: 0.99.96282 Depends: R (>= 3.2.0) Imports: gwascat, rtracklayer Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: 232595a12fe5116650c2769d6631dc5e NeedsCompilation: no Package: proteomics Version: 0.99.104813 Depends: R (>= 3.2.0) Imports: knitr, BiocInstaller, RforProteomics, nloptr, mzR, mzID, MSnID, MSnbase, rpx, MLInterfaces, pRoloc, pRolocdata, MSGFplus, rols, hpar, lattice Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: 25b7da7207d1da29b1797a88ee082c1f NeedsCompilation: no Package: rnaseqGene Version: 0.99.108571 Depends: R (>= 3.2.1) Imports: BiocStyle, knitr, rmarkdown, airway, Rsamtools, GenomicFeatures, GenomicAlignments, BiocParallel, DESeq2, pheatmap, RColorBrewer, PoiClaClu, ggplot2, genefilter, AnnotationDbi, org.Hs.eg.db, Gviz, sva, fission Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: d7fca8b6dc31e5fe48c266399c6f8653 NeedsCompilation: no Package: sequencing Version: 0.99.106465 Depends: R (>= 3.2.0) Imports: Biostrings, Rsamtools, BSgenome.Hsapiens.UCSC.hg19, GenomicRanges, GenomicAlignments, RNAseqData.HNRNPC.bam.chr14, VariantAnnotation, rtracklayer Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: 4151f318c84d93cad25e287df2ca1aa9 NeedsCompilation: no Package: variants Version: 0.99.104808 Depends: R (>= 3.2.0) Imports: VariantAnnotation, cgdv17, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19, ensemblVEP Suggests: knitr, knitcitations License: Artistic-2.0 MD5sum: 3d57c3bdb118499c7b2bcf960711feb7 NeedsCompilation: no