normaliseSpectra {ASICS} | R Documentation

## Normalisation

### Description

Normalise a data frame of spectra to a constant sum (CS) or with a method of `PepsNMR` package (see `Normalization`).

### Usage

    normaliseSpectra(spectra, type.norm = "CS", verbose = TRUE, ...)

### Arguments

`spectra` | Data frame with spectra in columns and chemical shifts in rows. Colnames of this data frame correspond to pure metabolite names and rownames to chemical shift grid (in ppm).
`type.norm` | Type of normalisation : "CS", "mean", "pqn", "median", "firstquartile" or "peak". Default to "CS".
`verbose` | A boolean value to allow print out process information.
`...` | other arguments to be passed to `Normalization`

### Value

A data frame with normalised spectra in columns and chemical shifts (in ppm) in rows.

### Examples

    current_path <- system.file("extdata", package = "ASICS")
    spectra_data <- importSpectra(name.dir = current_path,
                         name.file = "spectra_example.txt", type.import = "txt")
    spectra_norm <- normaliseSpectra(spectra_data, type.norm = "pqn")

[Package ASICS version 2.2.0 Index]