readOriImg {CONFESS} | R Documentation

## readOriImg

### Description

It reads and processes the original BF image

### Usage

    readOriImg(imgName, despeckle, pix, thresh, separator, image.type)

### Arguments

`imgName` | Character string. The file name of the image.
`despeckle` | Logical. If TRUE the BF image is despeckled.
`pix` | Integer. A cutoff specifing the size of the area to search for speckles.
`thresh` | Integer. A cutoff to perform the despeckle function. If pixel signal > median object signal + thresh, the object is a speckle and the median object signal is returned.
`separator` | Character string. Removes the Bright Field ("BF") and channel indicators from the image file names.
`image.type` | Character string. A triplet of IDs to characterize the type of images under study. They refer to the ImageType part of the original image or txt file names.

### Value

A list of BF image estimates

[Package CONFESS version 1.14.0 Index]