query_ctd_dise {CTDquerier} | R Documentation

## Function to query CTDbase using disease terminology

### Description

This function cheks for CTDbase disease vocabulary and query CTDbase for each one, downloading disease-gene interactions, chemicals interactions, associated desease, associated KEGG pathways and associated GO terms.

### Usage

    query_ctd_dise(terms, filename = "CTD_diseases.tsv.gz", mode = "auto",
      verbose = FALSE)

### Arguments

`terms` | Character vector with the diseases used in the query.
`filename` | (default `"CTD_diseases.tsv.gz"`) Name of the file to store the CTDbase disease vocabilary.
`mode` | (default `"auto"`) Mode passed to `download.file`.
`verbose` | (default `FALSE`) If set to `TRUE` is shows relevant information of each step.

### Value

An object of class `CTDdata`.

### Examples

    rst <- query_ctd_dise( terms = "Asthma", verbose = TRUE )

[Package CTDquerier version 1.5.0 Index]