sample_sce_data {CellBench} | R Documentation

## This is data for testing functions in CellBench.

### Description

A dataset containing 200 genes and 50 cells randomly sampled from the CelSeq mRNA mixture dataset, each sample is a mixture of mRNA material from 3 different human adenocarcinoma cell lines. Useful for quick prototyping of method wrappers.

### Usage

    data(sample_sce_data)

### Format

A SingleCellExperiment object with sample annotations in `colData(sample_sce_data)`. The annotation contains various QC metrics as well as the cell line mixture proportions

H2228_prop

  proportion of mRNA from H2228 cell line

H1975_prop

  proportion of mRNA from H1975 cell line

HCC827_prop

  proportion of mRNA from HCC827 cell line

### See Also

`load_mrna_mix_data`

[Package CellBench version 1.2.0 Index]