plot-BindScore {ChIPseqR} | R Documentation

## Diagnostic Plots for Binding Site Scores

### Description

Generates plots to assess the fit of the estimated null distribution.

### Usage

    ## S4 method for signature 'BindScore,missing'
    plot(x, npoints = 10000, type=c("density", "qqplot"), ...)

### Arguments

`x` | An object of class `BindScore`.
`npoints` | Maximum number of points to plot in a QQ-plot.
`type` | Character string indicating the plot type.
`...` | Further arguments (currently ignored).

### Details

Type ‘density’ produces a histogram of binding site scores with overlaid null distribution. Type ‘qqplot’ produces a normal QQ-plot comparing the observed binding site scores to the null distribution.

### Value

Called for its side effect.

### Author(s)

Peter Humburg

[Package ChIPseqR version 1.40.0 Index]