chip.data.list {DBChIP} | R Documentation

## ChIP data of transcription factor PHA-4/FOXA in C.elegans

### Description

This data set contains parts of ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans. Only ChIP data in chromosome I with position < 0.9M bp are included.

### Usage

    data("PHA4")

### Format

List of 4 elements: "emb_rep1", "emb_rep2", "L1_rep1" and "L1_rep2". Each element is a data.frame with fields: chr, strand and pos.

### Source

Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.

### See Also

`PHA4`

### Examples

    data(PHA4)
    names(chip.data.list)
    head(chip.data.list[["emb_rep1"]])

[Package DBChIP version 1.30.0 Index]