makeSegmentation {GenomeGraphs} | R Documentation

## Create objects of class segmentation

### Description

Construct objects of class segmentation

### Usage

    makeSegmentation(start, end, value, dp = NULL)

### Arguments

`start` | Either a list or a vector. If it is a list then it is a list of vectors of start position (this is the way it is represented in the segmentation class) If it is a vector it is a vector of start positions.
`end` | Same as start, but the corresponding end positions.
`value` | The y value of the segmentation, ie. segments(start[i], value[i], end[i], value[i])
`dp` | The Display parameters.

### Value

An object of class Segmentation

### Examples

    data("exampleData", package="GenomeGraphs")
    seg <- makeSegmentation(segStart[[1]], segEnd[[1]], segments[[1]],
                            dp = DisplayPars(color = "black", lwd=2,lty = "solid"))
    cop <- makeGenericArray(intensity  = cn, probeStart = probestart,
                            trackOverlay =  seg, dp = DisplayPars(size=3, color = "seagreen", type="dot"))
    gdPlot(cop)

[Package GenomeGraphs version 1.46.0 Index]