Brick_get_bintable {HiCBricks} | R Documentation

## Returns the binning table associated to the Hi-C experiment.

### Description

`Brick_get_bintable` makes a call to `Brick_get_ranges` to retrieve the binning table of the associated Brick store. This is equivalent to passing the argument rangekey = "bintable" in `Brick_get_ranges`

### Usage

    Brick_get_bintable(Brick, chr = NA, resolution = NA)

### Arguments

`Brick` | Required. A string specifying the path to the Brick store created with Create_many_Brick.
`chr` | Optional. A chr string specifying the chromosome to select from the ranges.
`resolution` | Optional. Default NA When an object of class BrickContainer is provided, resolution defines the resolution on which the function is executed

### Value

Returns a GRanges object containing the binning table associated to the Brick store.

### See Also

Brick_get_ranges

### Examples

    Bintable.path <- system.file(file.path("extdata", "Bintable_100kb.bins"),
    package = "HiCBricks")

    out_dir <- file.path(tempdir(), "list_get_bintable_test")
    dir.create(out_dir)

    My_BrickContainer <- Create_many_Bricks(BinTable = Bintable.path,
      bin_delim = " ", output_directory = out_dir, file_prefix = "Test",
      experiment_name = "Vignette Test", resolution = 100000,
      remove_existing = TRUE)

    Brick_get_bintable(Brick = My_BrickContainer, resolution = 100000)

[Package HiCBricks version 1.4.0 Index]