as {MSnbase} | R Documentation

## Coerce identification data to a `data.frame`

### Description

A function to convert the identification data contained in an `mzRident` object to a `data.frame`. Each row represents a scan, which can however be repeated several times if the PSM matches multiple proteins and/or contains two or more modifications. To reduce the `data.frame` so that rows/scans are unique and use semicolon-separated values to combine information pertaining a scan, use `reduce`.

### Arguments

`from` | An object of class `mzRident` defined in the `mzR` package.

### Details

See also the Tandem MS identification data section in the MSnbase-demo vignette.

### Value

A `data.frame`

### Author(s)

Laurent Gatto

### Examples

    ## find path to a mzIdentML file
    identFile <- dir(system.file(package = "MSnbase", dir = "extdata"),
                     full.name = TRUE, pattern = "dummyiTRAQ.mzid")
    library("mzR")
    x <- openIDfile(identFile)
    x
    as(x, "data.frame")

[Package MSnbase version 2.12.0 Index]