# Differential methylation anlsysis for bisulfite sequencing data

## Documentation for package ‘MethCP’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

calcLociStat | Calculate the per-cytosine statistics for simple two-group comparisons.
calcLociStatTimeCourse | Calculate the per-cytosine statistics for time-course data.
createBsseqObject | Helper function to read text files and create a bsseq object.
getSigRegion | Obtain the significant DMRs.
MethCP | Class 'MethCP'
MethCP-class | Class 'MethCP'
MethCPFromStat | Create a 'MethCP' object given the per-cytosine based tests.
segmentMethCP | Perform segmentation on a 'MethCP' object.
show-method | The show method