volcano_plot {MultiDataSet} | R Documentation

## Function to draw a Volcano Plot

### Description

Function that takes two numeric vectors (P-Value and fold change) and draws a volcano plot using `ggplot2`

### Usage

    volcano_plot(pval, fc, names, size = 2, tFC = 2, tPV = -log10(0.001),
      show.labels = TRUE, show.effect = FALSE)

### Arguments

`pval` | numeric vector of P.Values
`fc` | numeric vector of fold change
`names` | character vector with the feature's names.
`size` | (default `2`) Sice of the labels in case they are placed.
`tFC` | (default `2`) fold change threshold. It can be set to `NULL` to not filter.
`tPV` | (default `-log10(0.001)`) P-Value threshold. It can be set to `NULL` to not filter.
`show.labels` | (default `TRUE`) If set to `TRUE`, features are labelled.
`show.effect` | (default `FALSE`) If set to `TRUE`, the X-axis will should `2^logFC` instead to the default `logFC`.

### Value

A `ggplot` object

### Examples

    data(rset)
    w1 <- getAssociation(rset, rid = 1, fNames = NULL)
    volcano_plot(w1$P.Value, w1$logFC, rownames(w1))

[Package MultiDataSet version 1.14.0 Index]