cpData {PrecisionTrialDrawer} | R Documentation

## Method that returns the `dataFull` slot in a `CancerPanel` object.

### Description

This method returns a list with an element for each alteration type contained in the class `CancerPanel` slot `dataFull`

### Usage

    cpData(object)

### Arguments

`object` | a CancerPanel object

### Details

The length of the output list is always defined by 4 elements even if no data, for a certain alteration type, were requested.In case no data were requested or if there are no data for a certain tumor type, the slot is filled with `NULL` values. Every element is a list of 2 elements:

- `data` A `data.frame` in a format specific for the alteration type.

- `Samples` The second element is a `list` of vectors containing the names of the samples for each tumor type.

### Value

A list of 4 elements, one for each alteration type:

`mutations` | A list of 2 elements containing the mutation alterations for each gene requested in the panel.
`copynumber` | A list of 2 elements containing the copynumber alterations for each gene requested in the panel.
`expression` | A list of 2 elements containing the expression alterations for each gene requested in the panel.
`fusions` | A list of 2 elements containing the fusions alterations for each gene requested in the panel.

### Author(s)

Giorgio Melloni , Alessandro Guida

### References

data origin for mutations, copynumber and expression data data origin for fusion data

### See Also

`cpDataSubset`

### Examples

    # Load example CancerPanel object
    data(cpObj2)
    # Show slot dataSubset
    str( cpData(cpObj2) )

[Package PrecisionTrialDrawer version 1.2.1 Index]