cpDataSubset {PrecisionTrialDrawer} | R Documentation

## Method that returns the `dataSubset` slot in a `CancerPanel` object.

### Description

This method returns a list with an element for each alteration type. It shows the content of the slot `dataSubset` in the `CancerPanel` object.

### Usage

    cpDataSubset(object)

### Arguments

`object` | a CancerPanel object

### Details

The slot showed with this getter is a list of length 4 even if no data for a certain alteration type were requested. In case no data were requested or if there are no data for a certain tumor type, the slot is filled with a `NULL` value. If data are present but there are no alteration for the specified tumor types the slot is filled with a 0 rows `data.frame`.

### Value

A list of 4 elements, one for each alteration type:

`mutations` | a data.frame containing exactly the mutation alterations requested in the panel.
`copynumber` | a data.frame containing exactly the copynumber alterations requested in the panel.
`expression` | a data.frame containing exactly the expression alterations requested in the panel.
`fusions` | a data.frame containing exactly the fusions alterations requested in the panel.

### Author(s)

Giorgio Melloni , Alessandro Guida

### References

data origin for mutations, copynumber and expression data

data origin for fusion data

### See Also

`cpData`

### Examples

    # Load example CancerPanel object
    data(cpObj2)
    # Show slot dataSubset
    str( cpDataSubset(cpObj2) )

[Package PrecisionTrialDrawer version 1.2.1 Index]