ToyData_FWReads.fna {QSutils} | R Documentation

## Fasta file with forward reads

### Description

Fasta file with forward strand reads. Toy data used to illustrate the intersections of forward and reverse haplotypes with the function `IntersectStrandHpls`.

### Format

Fasta file format. Each sequence starts with the symbol ">" followed by the sequence ID. Subsequent lines correspond to the nucleotide sequences or peptide sequences.

### See Also

`ToyData_RVReads.fna`, `IntersectStrandHpls`

### Examples

    filepath_FW<-system.file("extdata","ToyData_FWReads.fna", package="QSutils")
    lstFW <- ReadAmplSeqs(filepath_FW,type="DNA")
    filepath_RV<-system.file("extdata","ToyData_RVReads.fna", package="QSutils")
    lstRV <- ReadAmplSeqs(filepath_RV,type="DNA")

    lstI <- IntersectStrandHpls(lstFW$nr,lstFW$hseqs,lstRV$nr,lstRV$hseqs)
    lstI

[Package QSutils version 1.4.0 Index]