DAVIDResult-class {RDAVIDWebService} | R Documentation

## class "DAVIDResult

### Description

This class represents the most generic result obtained in the Database for Annotation, Visualization and Integrated Discovery (DAVID) website (see References).

### Type

This class is a "`Virtual`" one.

### Heirs

- `DAVIDGenes`: basic gene information (ID, Name and Specie)

- `DAVIDCluster`: generic Cluster result (Term or Gene).

- `DAVIDFunctionalAnnotationChart`: EASE results on each Functional Category (see references).

- `DAVIDFunctionalAnnotationTable`: annotation for each gene, no statistical analysis.

### Slots

`type`

  Object of class "character". Contains the name of DAVID's result.

### Methods

`show`

  `signature(object="DAVIDResult")`: returns a basic console output.

`type`

  `signature(object="DAVIDResult")`: getter for type slot.

`plot2D`

  `signature(object="DAVIDResult", dataFrame="data.frame")`: internal ggplot tile plot for gene/term cluster and annotation heirs.

### Author(s)

Cristobal Fresno and Elmer A Fernandez

### References

1. The Database for Annotation, Visualization and Integrated Discovery (david.abcc.ncifcrf.gov)

2. Huang, D. W.; Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant, D.; Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C. & Lempicki, R. A. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, SAIC-Frederick, Inc., National Cancer Institute at Frederick, MD 21702, USA., 2007, 35, W169-W175

3. Huang, D. W.; Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res, Laboratory of Immunopathogenesis and Bioinformatics, Clinical Services Program, SAIC-Frederick, Inc., National Cancer Institute at Frederick, Frede#rick, MD 21702, USA., 2009, 37, 1-13

4. Xiaoli Jiao, Brad T. Sherman, Da Wei Huang, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki, DAVID-WS: A Stateful Web Service to Facilitate Gene/Protein List Analysis Bioinformatics 2012 doi:10.1093/bioinformatics/bts251

### See Also

Other DAVIDResult: `plot2D`, `plot2D`, `plot2D`, `plot2D`, `plot2D`, `plot2D`, `type`, `type`

[Package RDAVIDWebService version 1.24.0 Index]